PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g02480.3
Common NameLOC4328080, OJ1442_E05.19, Os02g0116600, OsJ_05121, OSNPB_020116600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 237aa    MW: 25593 Da    PI: 4.9237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g02480.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1170117454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRdr+N++f eL +++ ++   ++ Kl+Ka iL  A + + +L
  LOC_Os02g02480.3  70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117
                       6789***********************...**************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1359133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.25266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-869122No hitNo description
PfamPF000107.0E-970117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1271139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR  60
DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE  120
AEKLKESNEK LRETIKDLKV EKNELRDEKV TLKAEKERLE QQVKALSVAP TGFVPHLPHP  180
AAFHPAAFPP FIPPYQALGN KNAPTPAAFQ GMAMWQWLPP TAVDTTQDPK LWPPNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.178930.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886430.0
Expression AtlasQ6ZGM4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g02480.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g02480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372630.0EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds.
GenBankAK1041880.0AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence.
GenBankAK1034340.0AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence.
GenBankAK0608810.0AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626366.11e-173PREDICTED: transcription factor ILR3
SwissprotQ9FH374e-55ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D3EZT61e-173A0A0D3EZT6_9ORYZ; Uncharacterized protein
TrEMBLA2X0431e-173A2X043_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0G0481e-173A0A0E0G048_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N8V41e-173A0A0E0N8V4_ORYRU; Uncharacterized protein
TrEMBLI1NWK61e-173I1NWK6_ORYGL; Uncharacterized protein
TrEMBLQ6ZGM41e-173Q6ZGM4_ORYSJ; BHLH transcription factor
TrEMBLA0A0D9YLC11e-172A0A0D9YLC1_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g02480.11e-172(Oryza sativa Japonica Group)
STRINGBGIOSGA007247-PA1e-172(Oryza sativa Indica Group)
STRINGORGLA02G0011200.11e-172(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-42bHLH family protein