PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g02480.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 168aa    MW: 17903.3 Da    PI: 4.5958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g02480.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-1270117454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRdr+N++f eL +++ ++   ++ Kl+Ka iL  A + + +L
  LOC_Os02g02480.2  70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117
                       6789***********************...**************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.9E-1359133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.25266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-969122No hitNo description
PfamPF000103.8E-970117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1371140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR  60
DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE  120
AEKLKESNEK LRETIKDLKV FCSHNFLPST PGLECLMPST VMSCVLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.178930.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329886430.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g02480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g02480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588540.0HQ858854.1 Oryza sativa Japonica Group isolate UT1617 bHLH transcription factor mRNA, partial cds.
GenBankEU8372630.0EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds.
GenBankAK1041880.0AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence.
GenBankAK1034340.0AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence.
GenBankAK0608810.0AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626366.13e-94PREDICTED: transcription factor ILR3
TrEMBLA0A0D3EZT63e-94A0A0D3EZT6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YLC13e-94A0A0D9YLC1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G0483e-94A0A0E0G048_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N8V43e-94A0A0E0N8V4_ORYRU; Uncharacterized protein
TrEMBLA2X0433e-94A2X043_ORYSI; Putative uncharacterized protein
TrEMBLI1NWK63e-94I1NWK6_ORYGL; Uncharacterized protein
TrEMBLQ6ZGM43e-94Q6ZGM4_ORYSJ; BHLH transcription factor
STRINGBGIOSGA007247-PA8e-94(Oryza sativa Indica Group)
STRINGLOC_Os02g02480.18e-94(Oryza sativa Japonica Group)
STRINGORGLA02G0011200.18e-94(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-17bHLH family protein