PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g02424.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 380aa    MW: 43774.7 Da    PI: 8.2466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g02424.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-067092123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cg sF  + +Lk+H+++H
  LOC_Os02g02424.1 70 HTCQECGASFQKPAHLKQHMQSH 92
                      79*******************99 PP

2zf-C2H221.94.4e-0798122123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp  dC+ s+ rk++L+rH+ +H
  LOC_Os02g02424.1  98 FICPleDCPFSYIRKDHLNRHMLKH 122
                       78*********************99 PP

3zf-C2H215.54.8e-05127152123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C+   Cg+ Fs k n++rH +  H
  LOC_Os02g02424.1 127 FTCSmdGCGRKFSIKANMQRHVKEiH 152
                       89********************9988 PP

4zf-C2H215.84e-05164188123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++C+   C+k+F+  s +k+H  +H
  LOC_Os02g02424.1 164 FVCKeeGCNKVFKYASKMKKHEESH 188
                       89*******************9988 PP

5zf-C2H217.88.9e-06255279223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+   C  sFs+ksnL++Hi+  H
  LOC_Os02g02424.1 255 KCSfeGCECSFSNKSNLTKHIKAsH 279
                       688899***************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355242446IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-66789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00177092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5477097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-1182124No hitNo description
Gene3DG3DSA:3.30.160.605.3E-1290124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.80898127IPR007087Zinc finger, C2H2
SMARTSM003555.5E-498122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-8108156No hitNo description
Gene3DG3DSA:3.30.160.601.1E-7125154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4127152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154127157IPR007087Zinc finger, C2H2
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-7161188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0038164188IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764164188IPR007087Zinc finger, C2H2
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SMARTSM003555.7196221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
SMARTSM0035515224245IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-6236276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.01E-8237292No hitNo description
SMARTSM003550.002254279IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365254284IPR007087Zinc finger, C2H2
PROSITE patternPS000280256279IPR007087Zinc finger, C2H2
SMARTSM003555.8285311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCSGDDIDGD MRVEATQHRD IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN  60
GEKVVHEGDH TCQECGASFQ KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML  120
KHQGKLFTCS MDGCGRKFSI KANMQRHVKE IHEDETATKS NRQFVCKEEG CNKVFKYASK  180
MKKHEESHVK LDYVEVVCCE PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR  240
HLRAHEEVPS TERIKCSFEG CECSFSNKSN LTKHIKASHD QVKPFACRFT GCEKVFPYKH  300
VRDNHEKSSA HVYTQANFTE MDEQLLSCPR GGRKRKAVTV ETLTRKRVTM HGDASSLDNG  360
TEYLRWLLSG GDDDSSQTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-197426019174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-197426019174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180860.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856820.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g02424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g02424
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626855.10.0PREDICTED: zinc finger protein 729
SwissprotQ84MZ41e-105TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D3EZT10.0A0A0D3EZT1_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g02424.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA