PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g01950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 518aa    MW: 60781.8 Da    PI: 6.17
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g01950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.6e-22106200191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +++n+YA+++GFs+++++s ++   krnge++++tf+ +k+ k++ +kk+   ++er+t+++  t+Ck+ l+++++ ++ w++++++l+HnHe
  LOC_Os02g01950.1 106 NYFNFYAYMAGFSIVNAHSARTlskKRNGEVIRETFKYNKYVKSDCNKKEetITSERKTNEVIGTECKCVLVISER-NSIWVISRIDLDHNHE 197
                       69******************99999*******************9999997778999******************9.**************** PP

              FAR1  89 lap 91 
                       l+p
  LOC_Os02g01950.1 198 LSP 200
                       *86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-22106200IPR004330FAR1 DNA binding domain
PfamPF105514.4E-33320413IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MQKNMSEVIP EINFEAQVDS VQPWSLDLFN LQESIEQQSS IQSSDKGEST TEVDPDLNEE  60
FLTEEDIEQF LDEEQQEASK GNNASIDRKY IPELNQKFKS IDEAQNYFNF YAYMAGFSIV  120
NAHSARTLSK KRNGEVIRET FKYNKYVKSD CNKKEETITS ERKTNEVIGT ECKCVLVISE  180
RNSIWVISRI DLDHNHELSP PDEARFLRSH KYMSTEEKIL IRTLKECHIP TRNMIVILSV  240
LRGGLTSLPY TKKDISNVRT SINRETSSND LMQCLNFLKK KQEEDPNFFY EFDLDENRKV  300
KNFFWTDGRS REWYYKFGDC ISFDTTFLTN RYNLPFAPFV RVSGHGNTIL FGCAFIHDET  360
TETFEWLFRA FLKAMNGKQP KTIITDQDGA IRAAIKNIFT EAKHRNCFFH IVSKALKRSG  420
SLFKKRQGLY DIYNDIIHNS LTEEEFEFLW EDMIQVFNLQ DINFLRNMWE IRKRFIPVYF  480
KTNFYPFIQS TALSEGTHLV LLAITQIKNC NYRDKKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g01950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g01950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0047690.0AP004769.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0017C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3MVQ90.0J3MVQ9_ORYBR; Uncharacterized protein
STRINGLOC_Os02g01950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-73FAR1-related sequence 5