PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g01860.1
Common NameOsJ_35113
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 610aa    MW: 70350.7 Da    PI: 7.3143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g01860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.1e-2236125190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vrk++++ks+ ++ +t+++fvCs++g+r+eekk    ++r+r++trtgC+ ++ +++ + + +++v++l  eH+H l+
  LOC_Os02g01860.1  36 DFWVKYGGRIGFDVRKNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-AVAKRNRTHTRTGCQVRMGITLLReTMTYKVHDLAVEHSHLLQ 125
                       69*******************************************99.99999****************98889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1536125IPR004330FAR1 DNA binding domain
PfamPF105514.2E-27247341IPR018289MULE transposase domain
PROSITE profilePS509669.545388426IPR007527Zinc finger, SWIM-type
SMARTSM005758.8E-5401428IPR006564Zinc finger, PMZ-type
PfamPF044346.6E-5402424IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR KNYTNKSDLD  60
QLVTSSRFVC SNQGSRAEEK KYAVAKRNRT HTRTGCQVRM GITLLRETMT YKVHDLAVEH  120
SHLLQTPQTS RLMPSQRNIS KHQAVEIEVA YDSGITPKAA HEFLGRHVGG SANLGYTQRD  180
HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD  240
YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWMFNTFLS  300
AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NAVKHLSPQQ TEGSSILADF  360
SACMYEYEEK EEFEEVFDAM RQKFILEDEH KLTANPFDQT VSCSCRLFER IGLLCRHALK  420
ALDLVNIKLL PEKYVLKRWT REAKCGAIQD MHGRQIVEDP KLSTTLRYRY LYQQFLPLAS  480
RAADFEECYL LVEEALHAVS KKVEDKIKQT YSDGIAKSND QSTSQLAQNL AHVSGLKKKE  540
SRKRVTKRKT NWIDKLQKTK KRKPEEKAEE ENMQTDVEEH QECEAISSYA QLLLGSIDVE  600
DVILSQKFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1546560KRKTNWIDKLQKTKK
2546562KRKTNWIDKLQKTKKRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9GBQ0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g01860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g01860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0047690.0AP004769.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0017C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9GBQ00.0B9GBQ0_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g01860.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-64FAR1-related sequence 5