PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g01090.1
Common NameLOC107275345, Os02g0100900, OsJ_04985, OSNPB_020100900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 128aa    MW: 13999.7 Da    PI: 10.3063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g01090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-052951123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  LOC_Os02g01090.1 29 YPCGFCRREFRSAQALGGHMNVH 51
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.3E-62655No hitNo description
PROSITE profilePS5015710.7412956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNNSSGSSRR EEAWRQQQLI LQAKKARSYP CGFCRREFRS AQALGGHMNV HRRDRARLRL  60
THQPDAALIA SPSTKSTPPL LPNLNYPPPP PHDGASSSSP PHLPRPPADA DADADAGLDL  120
ELRLAFF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3A246
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g01090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0058730.0AP005873.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1370C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624301.15e-88PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ388959e-17SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLA0A0E0FZR75e-88A0A0E0FZR7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N8F05e-88A0A0E0N8F0_ORYRU; Uncharacterized protein
TrEMBLA2WZQ95e-88A2WZQ9_ORYSI; Putative uncharacterized protein
TrEMBLA3A2465e-88A3A246_ORYSJ; Os02g0100900 protein
STRINGBGIOSGA007316-PA2e-87(Oryza sativa Indica Group)
STRINGLOC_Os02g01090.12e-87(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-17C2H2 family protein