PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g73770.1
Common NameCBF2, DREB1F, ERF27, LOC4323832, OJ1656_A11.17, Os01g0968800, OsJ_004800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 220aa    MW: 23817.6 Da    PI: 6.1627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g73770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-154597156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                      + y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+ +l+ge
  LOC_Os01g73770.1 45 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGE 97
                      68********9999****9999.....446**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-124597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2546107IPR001471AP2/ERF domain
SMARTSM003801.8E-2446111IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1646107IPR016177DNA-binding domain
PROSITE profilePS5103221.1846105IPR001471AP2/ERF domain
CDDcd000186.43E-2147107No hitNo description
PRINTSPR003675.9E-64758IPR001471AP2/ERF domain
PRINTSPR003675.9E-67086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDTEDTSSAS SSSVSPPSSP GGGHHHRLPP KRRAGRKKFR ETRHPVYRGV RARAGGSRWV  60
CEVREPQAQA RIWLGTYPTP EMAARAHDVA AIALRGERGA ELNFPDSPST LPRARTASPE  120
DIRLAAAQAA ELYRRPPPPL ALPEDPQEGT SGGGATATSG RPAAVFVDED AIFDMPGLID  180
DMARGMMLTP PAIGRSLDDW AAIDDDDDHY HMDYKLWMD*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO336376990.0
Expression AtlasQ8S9Z5-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g73770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g73770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankAY7858970.0AY785897.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1F (DREB1F) gene, complete cds.
GenBankAY3452340.0AY345234.1 Oryza sativa transcription factor RCBF2 mRNA, complete cds.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0034480.0AP003448.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1656_A11.
GenBankLK9314610.0LK931461.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv336700.
GenBankLK9314530.0LK931453.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330631.
GenBankLK9314460.0LK931446.1 Oryza nivara OsDREB1F gene for transcription factor, allele O.niv330630.
GenBankLK9314410.0LK931441.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR78.
GenBankLK9314350.0LK931435.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR65.
GenBankLK9314120.0LK931412.1 Oryza nivara OsDREB1F gene for transcription factor, allele NKSWR70.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645845.11e-157PREDICTED: dehydration-responsive element-binding protein 1F
SwissprotA2WZI41e-159DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-159DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0E0FZG11e-157A0A0E0FZG1_ORYNI; Transcription factor
TrEMBLA0A0E0N8441e-157A0A0E0N844_ORYRU; Transcription factor
TrEMBLA0A0H5BVM51e-157A0A0H5BVM5_ORYSI; Transcription factor
TrEMBLI1NVL51e-157I1NVL5_ORYGL; Uncharacterized protein
STRINGBGIOSGA005257-PA1e-157(Oryza sativa Indica Group)
STRINGLOC_Os01g73770.11e-157(Oryza sativa Japonica Group)
STRINGORGLA01G0390500.11e-157(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-45C-repeat-binding factor 4
Publications ? help Back to Top
  1. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]