PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g72370.3
Common NameOs01g0952800, OSNPB_010952800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 248aa    MW: 26961.5 Da    PI: 5.6763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g72370.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-1469120155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+ +hn+ Er RR+++N+ ++ Lr llP a   +++Kls  +++ ++ +YI +Lq
  LOC_Os01g72370.3  69 RKLSHNAYERDRRKQLNELYSSLRALLPDA---DHTKLSIPTTVSRVLKYIPELQ 120
                       6889**************************...*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1667137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-1168124No hitNo description
PROSITE profilePS5088813.77668119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1369135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1269120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEQLFVDDPA FASSMSSLEA DIFSGAGQLP SSPWLDLDLD DDVQDLSMAP TTANAVSSGY  60
GSGGSGSHRK LSHNAYERDR RKQLNELYSS LRALLPDADH TKLSIPTTVS RVLKYIPELQ  120
KQVENLERKK KELTTTSTTN CKPGVLGSQL MSEGMAPIVS ATCINDMEIM VQVSLLSNVA  180
GSVLPLSKCI KVLENEGLHF ISSSTSSGFG NRTFYSIHLQ RSEGTINEEC PAFCERLEKV  240
VRNKAKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.218930.0callus| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329834080.0
Expression AtlasQ0JFZ0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g72370.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g72370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0733850.0AK073385.1 Oryza sativa Japonica Group cDNA clone:J033041D19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612709.11e-161PREDICTED: transcription factor bHLH100
TrEMBLQ0JFZ00.0Q0JFZ0_ORYSJ; Os01g0952800 protein
STRINGBGIOSGA000097-PA1e-160(Oryza sativa Indica Group)
STRINGLOC_Os01g72370.11e-160(Oryza sativa Japonica Group)
STRINGORGLA01G0380200.11e-160(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-30bHLH family protein