PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g71850.1
Common NameP0466H10.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1061aa    MW: 122595 Da    PI: 6.749
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g71850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.31.1e-27342438191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +f+n+YA++vGFsv++++++ks   kr g+itk+t++C+++gk+++ +kk    t+++r+t++ +rt+Ck++l+v++e  ++w++ +++l+Hn
  LOC_Os01g71850.1 342 SFFNFYAYQVGFSVVITHHYKStskKRFGQITKYTYQCYRYGKNDDGQKKkkkkTQQQRNTQVIDRTDCKCMLTVRLE-GDVWRILSMNLNHN 433
                       59*******************99989999**************99877777777899999******************.9************* PP

              FAR1  87 Helap 91 
                       H+l+p
  LOC_Os01g71850.1 434 HTLTP 438
                       **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-27342438IPR004330FAR1 DNA binding domain
PfamPF105513.9E-37559651IPR018289MULE transposase domain
PROSITE profilePS509669.767845881IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-4856883IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MTIYLSCREA IQEGETIRQQ SEESKNDAMH IEGSKRNINM APGRLAYAGS PNIYNLQEGE  60
GSSSKMPHLG CRKIQHVGKN FNSPELSNTI GTIASEVVNY GGQMLYDQFT LLNSDPRQEG  120
QLSYTNLMHQ IIHSPTVTIQ QQTGGQESFT SLLRTPAFDN SMILTTSRFS PELEEQQDMT  180
YEQHISTTHW SYEEFDQIYN SKYITPFAEN TTARIEELYQ SKNSHFTTKD NEVDMATEND  240
DYVELNSDDE NEQEGTSNML QQDSQINTIT AIEQVEQHVG QEETTSETKA TSAEDNDTIN  300
EEDINNYLAN EEDSQDNTPV VIDKKHIPCI GKKFRTHEEA RSFFNFYAYQ VGFSVVITHH  360
YKSTSKKRFG QITKYTYQCY RYGKNDDGQK KKKKKTQQQR NTQVIDRTDC KCMLTVRLEG  420
DVWRILSMNL NHNHTLTPNR EAKFLRSHKH MTDEEKKLIR TLKQCNIPTR NMISILSFLR  480
GGIAALPYTR KDVSNVGTAI NSETRNTDMN QVMEYLRQKE AKDPGYYYKL TLDENNKVKS  540
MFWTDGRSTQ LYEQYGEFVS FDTTYKTNRY NMPFAPIVGV TGHGNICIFA CAFLGDETTE  600
TFKWVFETFL TAMGGKHPET IITDQDLAMR AAIRQVFPNS KHRNCLFHIL KKCRERSGNT  660
FSDKRRKDLY AEFNDIVHNS LTRAEFESLW LQMIAQYNLE NIKYLEIMWR TRKNFIPVYS  720
KTDFCPFIHS TALSEGTNAR FKRGVGPTHS VMTFLLEYET INDIIFDTEY GKDYESRNKK  780
PKSFWSNYMI EEQAADLYNH GIFDKFQDEL KGTLNLEVAA IQQGKAYEVY AAPNLKQQEF  840
RPRRYVVMTD LPQENFMCIC AKFSKDGILC SHVLKVMLYL KMSKIPDKYI IERWRKKERK  900
LTVSMQLATN DENSSVLRFN VLSRRICNMA SKASKSKETY EYLLGEIDNL DSNLDLIIED  960
AAQNQATIDE SNTVENTSED QAEKETTNEQ EDIQDPDIAN TKGKKSTRTK GMVEKIKEQP  1020
KKHCTRCGRT SHTIENCPLM RIARSTKKIQ KTTTTSKRNE *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5JMV5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g71850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g71850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648733.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648734.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648736.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648737.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648738.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ5JMV50.0Q5JMV5_ORYSJ; Far-red impaired response-like
STRINGLOC_Os01g71850.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-90FAR1-related sequence 5