PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68700.2
Common NameLOC4324327, Os01g0915600, OSNPB_010915600, P0004D12.24
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 482aa    MW: 50044.8 Da    PI: 6.6256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68700.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09287334455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LOC_Os01g68700.2 287 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 334
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-10281338No hitNo description
SuperFamilySSF474591.44E-16281352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ  60
PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QVGGGGGGGG GLPILENLMP MGHLDQFLAD  120
PGFAERAARL SGFDARGGGG GGGYGGAGPA QFGLPDAGAA GASKEMELGN TRDESSVSDP  180
APGGAEIPPK GASDGNARKR KASGKGKGKD SPMSTSAAKE DSSGKRCKST EESNAAAEEN  240
SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS  300
QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL  360
AKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG LTNGMDNQGS MHPLDPAFCR  420
PMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG SLQTVHMKME  480
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.57630.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329862720.0
Expression AtlasQ5N802-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0PREDICTED: transcription factor bHLH77 isoform X2
TrEMBLB8A8550.0B8A855_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0N6Q70.0A0A0E0N6Q7_ORYRU; Uncharacterized protein
TrEMBLQ5N8020.0Q5N802_ORYSJ; BHLH transcription factor
STRINGBGIOSGA000262-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-60bHLH family protein
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]