PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68370.3
Common NameOsJ_04504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 706aa    MW: 73964.3 Da    PI: 6.5173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68370.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18515611295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++ +
  LOC_Os01g68370.3 515 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiK 604
                       79*************************999***********7777*******99777777777777.********************..6668 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  LOC_Os01g68370.3 605 SGKYLIR 611
                       8877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-27505620IPR015300DNA-binding pseudobarrel domain
CDDcd100151.16E-31512613No hitNo description
SuperFamilySSF1019369.16E-22513607IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278514616IPR003340B3 DNA binding domain
SMARTSM010191.9E-16514616IPR003340B3 DNA binding domain
PfamPF023623.1E-15515610IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDASAGSSAP AAEIRGEAAR DDVFFADDTF PLLPDFPCLS SPSSSTFSSS SSSNSSSAFT  60
TAAGGGCGGE PSEPASAADG FGELADIDQL LDLASLSVPW EAEQPLFPDD VGMMIEDAMS  120
GQPHQADDCT GDGDTKAVME AAGGGDDAGD ACMEGSDAPD DLPAFFMEWL TSNREYISAD  180
DLRSIRLRRS TIEAAAARLG GGRQGTMQLL KLILTWVQNH HLQKKRPRTA IDDGAASSDP  240
QLPSPGANPG YEFPSGGQEM GSAAATSWMP YQAFTPPAAY GGDAMYPGAA GPFPFQQSCS  300
KSSVVVSSQP FSPPTAAAAG DMHASGGGNM AWPQQFAPFP VSSTSSYTMP SVVPPPFTAG  360
FPGQYSGGHA MCSPRLAGVE PSSTKEARKK RMARQRRLSC LQQQRSQQLN LSQIHISGHP  420
QEPSPRAAHS APVTPSSAGC RSWGIWPPAA QIIQNPLSNK PNPPPATSKQ PKPSPEKPKP  480
KPQAAATAGA ESLQRSTASE KRQAKTDKNL RFLLQKVLKQ SDVGSLGRIV LPKKEAEVHL  540
PELKTRDGVS IPMEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGDFVRSNE LQEGDFIVIY  600
SDIKSGKYLI RGVKVRRAAQ EQGNSSGAVG KHKHGSPEKP GVSSNTKAAG AEDGTGGDDS  660
AEAAAAAAAG KADGGGCKGK SPHGVRRSRQ EAAAAASMSQ MAVSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73600.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329838280.0
Expression AtlasB9EVI3-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68370.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738050.0AK073805.1 Oryza sativa Japonica Group cDNA clone:J033069I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629311.10.0PREDICTED: B3 domain-containing protein VP1 isoform X1
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLB9EVI30.0B9EVI3_ORYSJ; Uncharacterized protein
STRINGBGIOSGA000276-PA0.0(Oryza sativa Indica Group)
STRINGORGLA01G0353400.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-61B3 family protein