PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68370.1
Common NameLOC4324314, Os01g0911700, P0470A12.15-1, P0470A12.15-2, VP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 728aa    MW: 75802.2 Da    PI: 6.8768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-17538633295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpk+  e h  ++k++ ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++ +
  LOC_Os01g68370.1 538 QKVLKQSDVGSLGRIVLPKEA-EVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiK 626
                       79****************996.6777*999***********7777*******99777777777777.********************..6668 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  LOC_Os01g68370.1 627 SGKYLIR 633
                       8877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-25528642IPR015300DNA-binding pseudobarrel domain
CDDcd100151.21E-29535635No hitNo description
SuperFamilySSF1019364.58E-19536629IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08537638IPR003340B3 DNA binding domain
SMARTSM010191.2E-12537638IPR003340B3 DNA binding domain
PfamPF023623.7E-14538632IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP  60
CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA ADGFGELADI DQLLDLASLS  120
VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD  180
APDDLPAFFM EWLTSNREYI SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV  240
QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP  300
AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA  360
PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA GVEPSSTKEA RKKRMARQRR  420
LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL  480
SNKPNPPPAT SKQPKPSPEK PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV  540
LKQSDVGSLG RIVLPKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL  600
LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE  660
KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRS RQEAAAAASM  720
SQMAVSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73600.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329838280.0
Expression AtlasP37398-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the whole embryo from 2 to 4 days after pollination (DAP). At 6 DAP, expressed in the regions where the shoot and radicle are developing, and in the aleurone layers and the outermost cell layers of the endosperm. Later, in the embryo development, expressed in vascular tissue, coleoptile, leaf, shoot meristem, radicle, scutellum and epiblast. In mature embryo (20 DAP), expression levels decrease. {ECO:0000269|PubMed:11917085}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1054410.0AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629318.10.0PREDICTED: B3 domain-containing protein VP1 isoform X2
SwissprotP373980.0VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA0A0E0FXG00.0A0A0E0FXG0_ORYNI; Uncharacterized protein
STRINGLOC_Os01g68370.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-59B3 family protein
Publications ? help Back to Top
  1. Hobo T,Kowyama Y,Hattori T
    A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(26): p. 15348-53
    [PMID:10611387]
  2. Miyoshi K,Kagaya Y,Ogawa Y,Nagato Y,Hattori T
    Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice.
    Plant Cell Physiol., 2002. 43(3): p. 307-13
    [PMID:11917085]
  3. Hattori T,Terada T,Hamasuna ST
    Sequence and functional analyses of the rice gene homologous to the maize Vp1.
    Plant Mol. Biol., 1994. 24(5): p. 805-10
    [PMID:8193305]
  4. Nakagawa H,Ohkura E,Ohmiya K,Hattori T
    The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells.
    Plant Cell Physiol., 1996. 37(3): p. 355-62
    [PMID:8673344]
  5. Schultz TF,Quatrano RS
    Characterization and expression of a rice RAD23 gene.
    Plant Mol. Biol., 1997. 34(3): p. 557-62
    [PMID:9225866]