PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g68160.1
Common NameLOC4324867, Os01g0909500, P0456E05.24-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 321aa    MW: 35551.2 Da    PI: 5.0392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g68160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06293316123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y+C+ C+k+F+++  Lk H +  H
  LOC_Os01g68160.1 293 YVCNSCKKTFNSSGALKDHSKAkH 316
                       9******************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-4293312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032293320IPR007087Zinc finger, C2H2
SMARTSM003550.0031293316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDVDFWGVVI EPCNKKEIFC PEDTLYHLTS VALDEAYGLK DSNVKVFVEV NDEKFAIGTL  60
SSKRHPHIKV DFCFKKNFQL FHTSLISKVA FCGYQVKNLG KFTDSEGDES DEEVPPDNMI  120
KEAQKSKLPA KSATVASAMQ KAFVKEIEHY EKSKADDDNN ERYRDISVVG ESTGNEDSSD  180
DADYEGKSSD EEETTAKEGE STDEKETPAK EGESSDEEET PAKNTKEENE PVVTPLKTFP  240
HEMAKIEAPI TDNKTGTNTS KRGSHLQVTN PHPAKQAKRT PIKNDTPKRS ASYVCNSCKK  300
TFNSSGALKD HSKAKHPATN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.90250.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329851180.0
Expression AtlasQ5N885-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g68160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g68160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0696410.0AK069641.1 Oryza sativa Japonica Group cDNA clone:J023026P04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616378.10.0PREDICTED: histone deacetylase HDT2 isoform X2
TrEMBLQ5N8850.0Q5N885_ORYSJ; Os01g0909500 protein
STRINGLOC_Os01g68160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-13histone deacetylase 2C