PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g67830.1
Common NameLOC4325025, Os01g0905400, OsJ_04461, OSJNOa108M02.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 674aa    MW: 75403 Da    PI: 6.2214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g67830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19.1e-1582169197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffk++    +++++ + +p +fa+++   +  +  + led  g +W+v+l    +++   ++ GWk+Fv ++++ +g+f+vF+ + rs f  +
  LOC_Os01g67830.1  82 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--T 165
                       66666..5566666.9**********6443..337***************..999999*************************9998999..8 PP

                       EEEE CS
                B3  94 vkvf 97 
                       v++f
  LOC_Os01g67830.1 166 VQIF 169
                       8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-2276174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1977172IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95779172IPR003340B3 DNA binding domain
CDDcd100171.98E-1780169No hitNo description
PfamPF023629.3E-1282169IPR003340B3 DNA binding domain
SMARTSM010199.0E-1382172IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32576671IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-12576669IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-14577667IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-10577669No hitNo description
SMARTSM010190.0035579671IPR003340B3 DNA binding domain
PfamPF023621.4E-7604667IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI  60
RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL  120
RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC  180
ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC  240
IDSGSEQRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS  300
TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETENCE  360
NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVSNGR  420
TPGDCFGVPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI  480
DAAPDDCKKD KDVLHSECNK VAQKAHSSVK QDITKDGPRQ IAAEIMSSDP KTCELTYVRK  540
NSVQPGISSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL  600
PRTKKQARKI LILKDPSMRL WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN  660
SELSFQVLVP NLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13749RRRKRVSDPQRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.517230.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735480.0
Expression AtlasQ5N6V0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g67830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g67830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635300.0AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645658.10.0PREDICTED: B3 domain-containing protein Os01g0905400
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0D9YIU60.0A0A0D9YIU6_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g67830.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89721014
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-11B3 family protein