PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g65080.4
Common NameLOC4324940, Os01g0871200, OsJ_04239, OSJNBb0008G24.8, P0039A07.24-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 523aa    MW: 57147.1 Da    PI: 5.7446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g65080.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.2e-06283304223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  LOC_Os01g65080.4 283 FCLICGKGFKRDANLRMHMRGH 304
                       5*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.76E-5280308No hitNo description
SMARTSM003550.012282304IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552282309IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-5284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SMARTSM0035568331364IPR015880Zinc finger, C2H2-like
SMARTSM0035522369391IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDSGLGRSSE TSLKALPSMA SNATRNTDPD QQGVRFSSMD QPPCFARPGQ SFPAFPPLFG  60
VQSSSLYLPD DIEAKIGNQF ESNPSPNNPT MDWDPQAMLS NLSFLEQKIK QVKDIVQSMS  120
NRESQVAGGS SEAQAKQQLV TADLTCIIIQ LISTAGSLLP SMKNPISSNP ALRHLSNTLC  180
APMILGTNCN LRPSANDEAT IPDISKTHDY EELMNSLNTT QAESDEMMNC QNPCGGEGSE  240
PIPMEDHDVK ESDDGGEREN LPPGSYVVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH  300
MRGHGDEYKT AAALAKPSKD SSLESAPVTR YSCPYVGCKR NKEHKKFQPL KTILCVKNHY  360
KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG  420
HTPALPMDDI KVTGASEQPQ GSEAMNTMVG SAGYNFPGSS SDDIPNLDMK MADDPRYFSP  480
LSFDPCFGGL DDFTRPGFDI SENPFSFLPS GSCSFGQQNG DS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87960.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329860490.0
Expression AtlasQ943I6-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g65080.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g65080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0035660.0AP003566.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24.
GenBankAP0032350.0AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07.
GenBankAK1008400.0AK100840.1 Oryza sativa Japonica Group cDNA clone:J023123F03, full insert sequence.
GenBankAK0724170.0AK072417.1 Oryza sativa Japonica Group cDNA clone:J023085P15, full insert sequence.
GenBankAK0722110.0AK072211.1 Oryza sativa Japonica Group cDNA clone:J013161E15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641307.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_015641300.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLF1DK810.0F1DK81_ORYSI; C2H2 transcription factor (Fragment)
STRINGLOC_Os01g65080.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-158C2H2 family protein