PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g64310.1
Common NameLOC4324781, Os01g0862800, OsJ_04163, OSNPB_010862800, P0423B08.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 257aa    MW: 28275.5 Da    PI: 5.1885
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g64310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.82.9e-4291422128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWka 85 
                       +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L +         +   e + w++F++r++++a+g r++r+t sgyWka
  LOC_Os01g64310.1   9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKA 99 
                       59***************************99***************854555431..14335669**************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        g+   v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+
  LOC_Os01g64310.1 100 AGTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142
                       *****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4438181IPR003441NAC domain
SuperFamilySSF1019414.71E-469180IPR003441NAC domain
PfamPF023659.3E-2410141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE  60
MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM  120
VFYRGRAPSG TKTAWKMNEY RAFHYPDASS ASASSAGAAA PPNHLPPQLR SEFSLCRLYT  180
RSGGIRQFDR RPLAGGGDEN PGPSMAAAAA SPEENDGSGS SMQQLELMDQ GGAVDPDWDQ  240
WDDLATLTAL LYWPRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-281014119141NO APICAL MERISTEM PROTEIN
1ut4_B8e-281014119141NO APICAL MERISTEM PROTEIN
1ut7_A8e-281014119141NO APICAL MERISTEM PROTEIN
1ut7_B8e-281014119141NO APICAL MERISTEM PROTEIN
3swm_A9e-281014422147NAC domain-containing protein 19
3swm_B9e-281014422147NAC domain-containing protein 19
3swm_C9e-281014422147NAC domain-containing protein 19
3swm_D9e-281014422147NAC domain-containing protein 19
3swp_A9e-281014422147NAC domain-containing protein 19
3swp_B9e-281014422147NAC domain-containing protein 19
3swp_C9e-281014422147NAC domain-containing protein 19
3swp_D9e-281014422147NAC domain-containing protein 19
4dul_A8e-281014119141NAC domain-containing protein 19
4dul_B8e-281014119141NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ94CW0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g64310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g64310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712740.0AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632691.10.0PREDICTED: NAC domain-containing protein 90 isoform X2
SwissprotQ9FMR37e-65NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0D3EWL80.0A0A0D3EWL8_9ORYZ; Uncharacterized protein
TrEMBLA2WX860.0A2WX86_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0N5E40.0A0A0E0N5E4_ORYRU; Uncharacterized protein
TrEMBLI1NTL20.0I1NTL2_ORYGL; Uncharacterized protein
TrEMBLQ94CW00.0Q94CW0_ORYSJ; NAC transcription factor-like protein
STRINGLOC_Os01g64310.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA004848-PA0.0(Oryza sativa Indica Group)
STRINGORGLA01G0320200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22781136
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-62NAC domain containing protein 90