PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g63980.1
Common NameLOC4325059, Os01g0859100, OSNPB_010859100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 377aa    MW: 41327.5 Da    PI: 6.5031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g63980.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06216235120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + C+ C+k+F+r  n++ H+
  LOC_Os01g63980.1 216 FICHVCNKTFNRYNNMQMHM 235
                       89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-5212239No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5216235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SuperFamilySSF576674.75E-5284320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRMGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED  60
GGGEIQEDHK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS SAHAAGVVEP GVELNIGLPV  120
TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT  180
AVGDMFGGVG AESGVAMSSR YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQMHMWGHGR  240
EYRKGPESLK GTQTLAMLKL PCYCCAAGCK NNVAHPRARP LKDFRTLQTH YKRKHGAKPF  300
RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HLPVAESAAA  360
AATTPADKDR IISFQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.361520.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329743520.0
Expression AtlasQ0JHK0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g63980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g63980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625834.10.0PREDICTED: protein TRANSPARENT TESTA 1
TrEMBLQ0JHK00.0Q0JHK0_ORYSJ; Os01g0859100 protein
STRINGLOC_Os01g63980.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.12e-92WIP domain protein 4