PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g63160.1
Common NameLOC4324801, Os01g0850400, OsJ_04089, OSNPB_010850400, P0414E03.28, P0529H11.17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 414aa    MW: 44329.6 Da    PI: 6.6965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g63160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-18111156147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
  LOC_Os01g63160.1 111 KGPWSSDEDTLLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 156
                       79******************************.***********985 PP

2Myb_DNA-binding52.89.1e-17163207147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r+++T+eEd ++  a++ +G++ W++Ia+ +  gRt++ +k++w++ 
  LOC_Os01g63160.1 163 RKPFTEEEDRIIMAAHAIHGNK-WAAIAKLLV-GRTDNAIKNHWNST 207
                       789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.345106161IPR017930Myb domain
SuperFamilySSF466899.35E-30109204IPR009057Homeodomain-like
SMARTSM007171.2E-14110159IPR001005SANT/Myb domain
PfamPF002495.5E-17111156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-24112164IPR009057Homeodomain-like
CDDcd001677.47E-14113155No hitNo description
SMARTSM007176.5E-16162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.74162212IPR017930Myb domain
PfamPF002499.6E-15163207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23165211IPR009057Homeodomain-like
CDDcd001675.87E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSETAASPP PPPPNPPAAD STHSSPASMT DETHGAGAHP DESQPHRSSS SSSSPPVAVD  60
GETRVPLPVR SLPQPSHPSP PPSGEDEDDV VITGQIAVGD AAGAAMEERV KGPWSSDEDT  120
LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI  180
HGNKWAAIAK LLVGRTDNAI KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW  240
PLGNLSSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN  300
VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR  360
KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL QSSDTLARSV PPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-401082111104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329937910.0
Expression AtlasQ8S282-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g63160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g63160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085820.0AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630688.10.0PREDICTED: transcription factor RAX1
TrEMBLQ8S2820.0Q8S282_ORYSJ; Os01g0850400 protein
STRINGLOC_Os01g63160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-78myb domain protein 109
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]