PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g59640.1
Common NameOs01g0811500, OSNPB_010811500, P0425G02.13, P0468B07.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 402aa    MW: 45485.9 Da    PI: 5.5009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g59640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.37.9e-291062433127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevl 93 
                       pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl
  LOC_Os01g59640.1 106 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVL 198
                       9***************************999**************9655541556********************66538************* PP

               NAM  94 sk..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                       ++  ++ l+g k  L+++         k +++++ kt W m e+ 
  LOC_Os01g59640.1 199 DAlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 243
                       99888889**********8887777766899999*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.251104271IPR003441NAC domain
SuperFamilySSF1019412.22E-37104271IPR003441NAC domain
PfamPF023651.4E-14106243IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLENLEQP LPLLMPSSED HREQQLVPVP  60
WLQQDQDQEW HEQEQFLPLK NQNQEQLQDQ QPLQDQEETR RYLGVPGIRF VPSDIELILD  120
FLRPKLRGEQ LPSYSYMHVC DVYSDHPKEL TSKLGPSREG NWYMFSPRNR KYNKGKRPSR  180
STGQLGFWKS TTKNEAVLDA LSDNMLIGYK ACLTYHEYDE SMPTPKLKKE NAIKTPWKMW  240
EFVCSNSNRP FDAEEEPMRL NDWVLCKVTN KDNKVTTKKF KPQRSKKPKK PKKLQQEEQP  300
QNQGIVIRQP SESGSASSSH QEIPGSSLPG AGGDAAAAAA TAAAVVDPMP LHMIPPSSWN  360
YFSTGVTADG IVMDDSTGVD SYGCVDGAGA LNFQRNIFYH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1710627417171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8RU89
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g59640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g59640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032600.0AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0PREDICTED: protein ATAF2-like
TrEMBLQ8RU890.0Q8RU89_ORYSJ; Os01g0811500 protein
STRINGLOC_Os01g59640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1891622
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-20NAC domain containing protein 47