PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g57020.1
Common NameOsJ_03664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 407aa    MW: 44372.1 Da    PI: 10.3883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g57020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013325345223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C+ Cgk F  + +L++H++++
  LOC_Os01g57020.1 325 RCSQCGKEF-KPQELHSHMQSC 345
                       6********.*********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061362.2E-3421166IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL  60
RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS  120
SLAEEPKKLD SQEVKVACDQ KQVEEVTTTT APDSDERSPK TLPPVDEDSP GEPASRSTAP  180
LKKDLPRGLR EERKKQQREV VKVVSKAVVV PAPAPEQKVK GAASGRISSH TPPAVGSARR  240
MHLAQLLHNL LTCGAADADD TALRPVLRHG ADDDGGDWPP TPVCPGIDGC GLRVGKKVKV  300
RRGRKDKAKP KRDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV  360
SVDRGRTSAA ARPEHRRTRS KGAAAAAAAP GDTSDRPSAV LLLRDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.753510.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977204520.0
Expression AtlasB9ETB3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g57020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g57020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414810.0AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633111.10.0PREDICTED: protein UPSTREAM OF FLC
TrEMBLB9ETB30.0B9ETB3_ORYSJ; Uncharacterized protein
STRINGLOC_Os01g57020.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP866535
MonocotsOGMP107941213