PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g54890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 238aa    MW: 24000.2 Da    PI: 10.9079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g54890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20126177256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+  g  +r +lg+fgtaeeAa+a+++a+ +++g+
  LOC_Os01g54890.1 126 HYRGVRRRP-WGKYAAEIRDPTRHG--ARLWLGTFGTAEEAAAAYDRAAFRMRGA 177
                       7********.**********96544..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.8E-31125184IPR001471AP2/ERF domain
PfamPF008472.1E-14126176IPR001471AP2/ERF domain
PROSITE profilePS5103224.21126184IPR001471AP2/ERF domain
SMARTSM003808.3E-35126190IPR001471AP2/ERF domain
CDDcd000188.53E-18126186No hitNo description
SuperFamilySSF541717.19E-23126185IPR016177DNA-binding domain
PRINTSPR003671.5E-10127138IPR001471AP2/ERF domain
PRINTSPR003671.5E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSLSLGFSAG AGVGADRLAA APALQAAGAL PPRVDVSLSL ARAANGQPSS YLPLNENDSL  60
DMVLFDVLRE ASAVAALSSS SSSSPELGAR TTAPVVAGHP AGRKGGGGGG GGRGAAARGG  120
AAGGRHYRGV RRRPWGKYAA EIRDPTRHGA RLWLGTFGTA EEAAAAYDRA AFRMRGAKAL  180
LNFPPAVAGD GARRGAAAAA KQVGMSDVVP RACHVVCYSV LSAHIFYDIF RGVIPIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-31122187166ATERF1
3gcc_A7e-31122187166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103112KGGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.745920.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g54890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g54890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032490.0AP003249.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435B05.
GenBankAP0032370.0AP003237.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615523.11e-139PREDICTED: pathogenesis-related genes transcriptional activator PTI5
SwissprotO046811e-42PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0E0N2I41e-165A0A0E0N2I4_ORYRU; Uncharacterized protein
STRINGLOC_Os01g54890.11e-164(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-12ethylene responsive element binding factor 2