PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g54600.1
Common NameLOC4324624, Os01g0750100, OSNPB_010750100, P0481E12.50-1, WRKY13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 317aa    MW: 34294.6 Da    PI: 4.6012
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g54600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.5e-3098156259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  LOC_Os01g54600.1  98 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 156
                       69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3195158IPR003657WRKY domain
SuperFamilySSF1182904.71E-2696158IPR003657WRKY domain
SMARTSM007742.9E-3697157IPR003657WRKY domain
PROSITE profilePS5081131.86998158IPR003657WRKY domain
PfamPF031063.2E-2699156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAAGEEVMDR STSAEDGYCS AGTDSPRAES VDEQGAAEES SPRGGQKREL PSPSASPSSP  60
LPPAAKRSRR SVEKRVVSVP IAECGDRPKG AGEGPPPSDS WAWRKYGQKP IKGSPYPRGY  120
YRCSSSKGCP ARKQVERSRA DPTVLLVTYS FEHNHPWPQP KSSSCHASKS SPRSTAPKPE  180
PVADGQHPEP AENESSASAE LEVPEPEPEQ ESEPVVKQEE EQKEEQKAVV EPAAVTTTVA  240
PAPAVEEEDE NFDFGWIDQY HPTWHRSYAP LLPPEEWERE LQGDDALFAG LGELPECAVV  300
FGRRRELGLA ATAPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-17991581977Probable WRKY transcription factor 4
2ayd_A6e-17981581574WRKY transcription factor 1
2lex_A9e-17991581977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.21600.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166362770.0
Expression AtlasQ94J08-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g54600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g54600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8706020.0AY870602.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
GenBankAK0673290.0AK067329.1 Oryza sativa Japonica Group cDNA clone:J013100D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLQ94J080.0Q94J08_ORYSJ; Os01g0750100 protein
STRINGLOC_Os01g54600.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-38WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]