PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g53220.1
Common NameB1060H01.5, HSF03, HSF11, HSFC1B, LOC4324158, Os01g0733200, OsJ_012463, OSJNBb0036G09.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 251aa    MW: 27219 Da    PI: 8.9496
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g53220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.68.5e-33251172103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k++++++d++++ +++w   gn+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+ +ll
  LOC_Os01g53220.1  25 FVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQAQLL 108
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                        +i rkk++
  LOC_Os01g53220.1 109 PRIVRKKKK 117
                       *****9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3519108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMGGECKVHQ LQAAGDGGPG AVAPFVAKTF HMVSDPSTNA VVRWGGAGNT FLVLDPAAFS  60
DFLLPSYFKH RNFASFVRQL NTYGFRKVDP DRWEFAHESF LRGQAQLLPR IVRKKKKGGA  120
APGCRELCEE GEEVRGTIEA VQRLREEQRG MEEELQAMDQ RLRAAESRPG QMMAFLAKLA  180
DEPGVVLRAM LAKKEELAAA GNNGSDPCKR RRIGADTGRG GVATGGDAAE MAQSRGTVPF  240
PFSVLGQVFY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-281511419129Heat shock factor protein 1
5d5v_B8e-281511419129Heat shock factor protein 1
5d5v_D8e-281511419129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.356810.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329763340.0
Expression AtlasQ942D6-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g53220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g53220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444930.0AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.10.0PREDICTED: heat stress transcription factor C-1b
SwissprotQ942D60.0HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0N2340.0A0A0E0N234_ORYRU; Uncharacterized protein
STRINGLOC_Os01g53220.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]