PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g53040.1
Common NameLOC4324426, Os01g0730700, OSNPB_010730700, P0435H01.28, WRKY14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 320aa    MW: 33125.6 Da    PI: 4.6567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g53040.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-3094152259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+
  LOC_Os01g53040.1  94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 152
                       69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.20488154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-3190152IPR003657WRKY domain
SuperFamilySSF1182908.37E-2691152IPR003657WRKY domain
SMARTSM007742.9E-3693153IPR003657WRKY domain
PfamPF031063.6E-2695151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDGEWSDGAA VSSPTMSGGG GREQMKGGED VAAADCPGSP VSPSPAAAQR SAAGAAASPS  60
GRSRRSAQKR VVTVPLADVT GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS  120
SSKGCPARKQ VERSRNDPDT VIVTYSFEHN HSATVPRAQN RQAAPQKPKA QACSPPEPVV  180
EVEPEETHQY GVTAGPATGG GGGAAAIEVR DEFRWLYDVV SVPATSTSPS DIDAADEMQL  240
YDQPMFFGGA VVGTAALLPD EFGDVGGLGG EGLGEEEALF EGLGELPECA MVFRRRAGDG  300
LEMGGGVKIE QPAESTAMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17951511671WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.59410.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329949790.0
Expression AtlasQ94EA8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g53040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g53040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLQ94EA80.0Q94EA8_ORYSJ; Os01g0730700 protein
STRINGLOC_Os01g53040.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1436244
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-37WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]