PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g52514.1
Common NameLOC9268171, Os01g0723500, P0022F10.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 403aa    MW: 44783.2 Da    PI: 10.5939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g52514.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.73.3e-2121120199
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       ffkvl     + ++rl +p +f++++        +g ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +fvvF++d
  LOC_Os01g52514.1  21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRYD 108
                       56666..3444.457********888******996666799*****************..********************************* PP

                       SSSEE..EEEEE-S CS
                B3  86 grsefelvvkvfrk 99 
                       g+++f  + +vf++
  LOC_Os01g52514.1 109 GNTRF--TAMVFDR 120
                       99999..6666665 PP

2B353.54.4e-17293379598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ +v  s ++++p  f ++h   ++e ++++l+d+ g++W+v +i  ++++r  l++GW  F++ n L+egD +vF+l+   ef  +v++f
  LOC_Os01g52514.1 293 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIF 378
                       6788999999*********9995..345679***************4.444455..9**********************9986666..99999 PP

                       - CS
                B3  98 r 98 
                       r
  LOC_Os01g52514.1 379 R 379
                       8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2116123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2117125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01418121IPR003340B3 DNA binding domain
CDDcd100171.08E-1819119No hitNo description
PfamPF023627.0E-1921119IPR003340B3 DNA binding domain
SMARTSM010196.1E-1321121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-22281379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-23283379IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-25287379No hitNo description
SMARTSM010191.5E-12289381IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944289381IPR003340B3 DNA binding domain
PfamPF023625.6E-16291379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA  60
ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMVFDR  120
TACEREDLMG GGGGDRPRKK RGRPRTAAAS RDAARPKKDS VGKEMVTYRA SPSGGQPLQI  180
VDSSWTPEPG STAVKNEEDA DELPVCELPA SSASPPRHVP EGALDADGGA ARRGAAKTRS  240
LQDDLALASI PPSIRRYKGY VSRRRAVATA ERQRATEIAH AFRSPLPYCV IRMSTMHVYY  300
SFMMRFPTGF SRQHLPRERT DVVLRDPGGK VWSVLYIPNT RDRLSRGWCA FARGNCLEEG  360
DYCVFELVAA AEFRVHIFRV VEPAVPAVRL RRVTVTCGRG PT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.658810.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8S2E6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g52514.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g52514
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032290.0AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614236.10.0PREDICTED: B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0E0N1W00.0A0A0E0N1W0_ORYRU; Uncharacterized protein
STRINGLOC_Os01g52514.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7653917
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein