PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g51154.2
Common NameLOC4327680, myb28, Os01g0708000, OSNPB_010708000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 305aa    MW: 32997.4 Da    PI: 9.5625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g51154.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+e l ++v ++G+g W+tI +          R+  ++k++w+++
  LOC_Os01g51154.2  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                      79***********************************9************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.498160IPR017930Myb domain
SuperFamilySSF466899.72E-16258IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14556IPR009057Homeodomain-like
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116607.87E-21656No hitNo description
SMARTSM005267.8E-998175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.042112180IPR005818Linker histone H1/H5, domain H15
PfamPF005382.8E-6118172IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-10118186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-11118186IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPNSMV  120
IEALCEIGDP NGSDVDAICH YIEQRHEVQA NFRRLLTAKL RRLIAAKKIE KIDRSYRITE  180
SYAAKVSQAN KSPSPKKDPA KPLKASQNLG SFAGTSPALE AAAAAAMKVA DAEAKSHLAN  240
EHMTEAERIF KLAEETESLV TLATEIYERC SRGEILTIMQ VAQSNFEFQS VSGNGSGTGS  300
TVLA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.78100.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GUA0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g51154.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g51154
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622157.10.0PREDICTED: single myb histone 4 isoform X2
SwissprotQ6WLH41e-110SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0D3ET410.0A0A0D3ET41_9ORYZ; Uncharacterized protein
TrEMBLQ8GUA00.0Q8GUA0_ORYSJ; MYB28 protein
STRINGBGIOSGA004300-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os01g51154.10.0(Oryza sativa Japonica Group)
STRINGORGLA01G0233700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-47MYB_related family protein