PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g51140.1
Common NameLOC4327679, Os01g0707500, OsJ_03197, OSNPB_010707500, P0510F09.19-1, P0692C11.41-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 394aa    MW: 40296.7 Da    PI: 7.0573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g51140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-06290330954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P  +      K++ a++L +A  Y+k L
  LOC_Os01g51140.1 290 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 330
                       599*****************955......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-10272335No hitNo description
PROSITE profilePS5088814.189281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13287340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-10290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL  60
QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG  120
GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGYDAEVV SPTSTMSAAT QSLHPKRKLY  180
DDHHHPAGIA AAAAAPPLAP CPRPTTGAVA AKRRASTSAT SITFGHQPHH HHAGATTAGY  240
EPDMEAMAQV KEMIYRAAAM RPVHLGTEAA ADKPRRKNVR ISSDPQTVAA RLRRERVSDR  300
LRVLQKLVPG GNKMDTASML DEAASYLKFL KSQVQKLETL GTTTTTSKLP QQYYSGNINS  360
SNNHHGFLGF AANNNTISAG YANSNAGNAT KLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277DKPRRKN
2272277KPRRKN
3290295RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.255460.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166308380.0
Expression AtlasQ8S0N2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g51140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g51140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033810.0AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0032730.0AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAK1061190.0AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629328.10.0PREDICTED: transcription factor bHLH69
RefseqXP_015629336.10.0PREDICTED: transcription factor bHLH69
RefseqXP_015629344.10.0PREDICTED: transcription factor bHLH69
TrEMBLA0A0E0FRY10.0A0A0E0FRY1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N1G20.0A0A0E0N1G2_ORYRU; Uncharacterized protein
TrEMBLQ8S0N20.0Q8S0N2_ORYSJ; BHLH transcription factor-like
STRINGLOC_Os01g51140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-34bHLH family protein