PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g47670.1
Common NameOsJ_02940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 365aa    MW: 40538.3 Da    PI: 6.7948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g47670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.11.4e-096114849128
               NAM  49 k......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       +      + +++++ wyfFs  +    +g rk r+++  +g W++    k+vl++ +g+  g ++++ f ++ ++ + +++ W+m e +l
  LOC_Os01g47670.1  61 TgfapavARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEAGAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 148
                       145554333457889*****98775..588999976644788**9999999998868889**********5436667789*****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.73421164IPR003441NAC domain
PfamPF023654.1E-950147IPR003441NAC domain
SuperFamilySSF1019411.57E-1652164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGAASRPRRQ CRAPRRLDGG GGGSMDVHPS ELLPRSRCTA PRRLDDDEMD VHPSEQELIE  60
TGFAPAVARS SGDEAWYFFS AVRGLKGGRK ARTVDDGAGC WHSEAGAKPV LAASSGRRLG  120
HRQSFSFITK DDDGQRVRSG WLMVELSLDV DEEEQLVLSK VYFSPRAPGA RKPTTAAAMS  180
RHKRKLSTTD IASPPRRQRR HRVVPSSPPE EPNTSPSPAA APPDQQEGGD DDPDRGSISW  240
WLRRVFGLTA TFTEEESIEL NPWLKDILRP FPPPLPPTPP PPCPSPRRKL IDMPEIREFI  300
MRGSYLGGGP APPRYECDHP AMVMTGGDDQ QQLDEQRRDD VGDDRAHYDR VDGQLQFERH  360
YLQL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA2ZWC2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g47670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g47670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0037600.0AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.10.0PREDICTED: uncharacterized protein LOC107276912
TrEMBLA2ZWC20.0A2ZWC2_ORYSJ; Uncharacterized protein
STRINGLOC_Os01g47670.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972