PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g46800.1
Common NameLOC4324183, OSJNBa0049H05.39, P0694A04.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 275aa    MW: 29056.4 Da    PI: 7.4157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g46800.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.51e-26100161159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  LOC_Os01g46800.1 100 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGDHTCA 161
                       59***************************98999*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-2887161IPR003657WRKY domain
SuperFamilySSF1182905.49E-2593161IPR003657WRKY domain
PROSITE profilePS5081121.64395158IPR003657WRKY domain
SMARTSM007741.2E-38100162IPR003657WRKY domain
PfamPF031062.2E-25101160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAGADERCR ALVSGLLSSI DRSISIARSC CTEAAAAGRL TQQAGAAPES PPSADGSAGS  60
DLGADSRCRA NAAGPCKKRK TLPKWSKQVK VRSVQDVGPL DDGFSWRKYG QKDILGAKYP  120
RAYFRCTHRH TQGCHASKQV QRADGDPLLF DVVYHGDHTC AHGVRSAAAA IDGQAAASAE  180
QKHQPTPPQE QNAVSVAFTS MAVVNASTSS PFVSPAMSDC QISYELGGGS MAGVRNVPDV  240
ELASKTNSSM GDDMEFMFSL DSDFLDTYKY SSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-1491158872Probable WRKY transcription factor 4
2lex_A3e-1491158872Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO508439570.0
Expression AtlasQ94DC5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g46800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g46800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769260.0AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632319.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLQ0JKQ90.0Q0JKQ9_ORYSJ; Os01g0656400 protein
TrEMBLQ6B6R30.0Q6B6R3_ORYSI; Transcription factor WRKY98
TrEMBLQ94DC50.0Q94DC5_ORYSJ; Transcription factor WRKY08-like
STRINGBGIOSGA001093-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os01g46800.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-41WRKY family protein