PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g44430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 1552aa    MW: 142667 Da    PI: 10.3594
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g44430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.99.9e-2813561407358
       ZF-HD_dimer    3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58  
                        ++rY+eCl+NhAa+ Ggh+vDGCgEfmp+    +t + l CaACgCHR+FHRr+++
  LOC_Os01g44430.1 1356 RCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLACAACGCHRSFHRRDPS 1407
                        79**************************9....5668****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.160.10.105.6E-58661015No hitNo description
ProDomPD1257742.0E-3513401405IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2213571405IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-2413581405IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.81813591405IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.2E-2614671540IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1614701539IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-2214791534IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1552 aa     Download sequence    Send to blast
MANFYSGVLI FSVLLISLWT VTPVLSHSEL DYGRRAKNEK TPNDGNDMSK EIGKGEEQHV  60
NQEAADAAVV LKTKEEIAKR TAEHIQSTIG SSRVAIHEKE ELLEKTAEVM SHMAGEVSDQ  120
LSKVAKEHTK IAVGSIATAL KFKQEVLKQA AQRVKDVSED VHMATKAKQE ILQNVAHDMG  180
KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGA RVHVSGGIHA NIHISASASA  240
HAKASAAASA GVGAKASKSV SGNVGNNAEE YAGANGNVHG KAKAGISAGF GISAGAKVAA  300
GIGANAGVGG DAQTNAKAGV GAGIGISGGA KVAGGIGAKA GVGADANANA KAGIGAGVGI  360
SGGAKVGADI GAKAGVGGNA NAKAGVGAGV GISGGAKVGA KIGAKAGVGG DVNAKAGIGA  420
GVGISGDTKL GADIGAKAGV GADANANAKA GIGAGVGISG GAKVGADIGA KAGVGGDAYT  480
KAKAGVGAGV GISGGAKVAS GIGANAGVGA DANANAKAGI GAGVGISGAA KVGADIGAKA  540
GVGGDMNAKA GIGAGVGISG GAKVGADIGA KAGVGADTNV NAKAGIGAGA GISGGAKVGA  600
DIGAKAGVGA DANAKAGIGA GIGISGGAKV GADIGAKAGV GADANANAKA GIGAGVGISG  660
GAKVGADIGA KAGVAGDTYT KEKAGVGAGV GISGGAKVGA EIGAKAGVGA DANANEKAGI  720
DAGVGISGRA KVGAGIGAKA GIGANANANA KAGIGAGVGI SGGAKVGADI GAKARVGADA  780
NANAKAGIGA GAGISGGAKV GADIGAKAGV GGGAIAKAGI GAGVGISGGA KVGADIGAKT  840
GVAGDANAKV GIGAGVGISG GAKVGADIGA KAKVGGDTNA KAGIGAGVGI SGGAKVGADI  900
GAKAEVGADA NAKAKASIGA GVGISGGAKV GADIGAKAGV GGDVYTKAKA GVGADVGISG  960
GAKVAGGIGT NARVGADANA NAKAGIGAGV GISGGAKVGA DIRAKAGVGG DVNAKAGIGA  1020
GVDISGGAKV GTDIGAKAGV GADANANAKA GIGAVAGISG GAKVGTDIGA KAGVGADANT  1080
KAGIGAGGGI SGGAKVGADI GAKAGVGADA NANAKDGIGA GAGISGGAKV GADIRAKAGG  1140
GADANANAKD GIGAGAGISR GAKVGADIGA KAGVGADANA KAGIGAGVGI SGGAKVGADI  1200
GAKARVGADA NANAKAGIGA GASISGGAKV GADIGAKAGV GADANSKAGI GAGVGISGGV  1260
KVGADIGAKA GVGADVNANA KAGIGAGVGI SGGAKVGADI GAKAGVGGDA YTKAKAGVGA  1320
GLSEHEEDAG DVGGGCSSPP TPPHRVLTSA APETIRCRYH ECLRNHAAAS GGHVVDGCGE  1380
FMPASTEEPL ACAACGCHRS FHRRDPSPGR AGAARLPQLH LPASINSRAP PALLLPPAAA  1440
ASKQGLPFPG YGTPSGGTGT TTASSSDERL RPSPVQPRRR SRTTFTREQK EQMLAFAERV  1500
GWRIQRQEEA TVEHFCAQVG VRRQALKVWM HNNKHSFKQK QQQENRQEQQ Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.914160.0leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g44430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g44430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0043670.0AP004367.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638769.10.0PREDICTED: fibroin heavy chain-like
TrEMBLA0A0E0MZQ80.0A0A0E0MZQ8_ORYRU; Uncharacterized protein
STRINGLOC_Os01g44430.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
MonocotsOGMP1392622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-39homeobox protein 22