PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g44370.1
Common NameOs01g0635000, OSNPB_010635000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 94aa    MW: 10138 Da    PI: 8.9446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g44370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-091965346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       WT++  +++ +a + + ++   +W+ +ar+mg  +++++++ ++  
  LOC_Os01g44370.1 19 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGAKSAEEVRRHYER 65
                      7********************************999********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6781571IPR017884SANT domain
SMARTSM007179.1E-71669IPR001005SANT/Myb domain
SuperFamilySSF466894.1E-111872IPR009057Homeodomain-like
CDDcd001672.43E-71966No hitNo description
Gene3DG3DSA:1.10.10.609.8E-51973IPR009057Homeodomain-like
PfamPF002492.6E-71966IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSSKASSS SSASAASSEW TKQQNKQFER ALAVYDTDAP DRWHNVARYM GGAKSAEEVR  60
RHYERLQADV EQIEAGGVPF SLGYGATPQA GRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-201180270RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0V5P4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g44370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g44370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-156CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankAP0149571e-156AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0072511e-156AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBankAP0043171e-156AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638756.18e-63PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D3ERL88e-63A0A0D3ERL8_9ORYZ; Uncharacterized protein
TrEMBLA0A0P0V5P41e-62A0A0P0V5P4_ORYSJ; Os01g0635000 protein (Fragment)
TrEMBLA2WSZ18e-63A2WSZ1_ORYSI; Putative uncharacterized protein
TrEMBLQ8RYM58e-63Q8RYM5_ORYSJ; Uncharacterized protein
STRINGBGIOSGA004060-PA2e-62(Oryza sativa Indica Group)
STRINGLOC_Os01g44370.12e-62(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-24RAD-like 6