PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g43550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 351aa    MW: 36915.6 Da    PI: 6.4072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g43550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27179237259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  LOC_Os01g43550.1 179 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 237
                       799***********************9988***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377173239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-27174239IPR003657WRKY domain
SuperFamilySSF1182901.24E-24176239IPR003657WRKY domain
SMARTSM007741.6E-32178238IPR003657WRKY domain
PfamPF031061.1E-22180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP  60
ARAPDGPDQM ARASASALYD LEYLDLDHKP FLLPGSSSSS SSSRAVARAR GEDDGKGRHE  120
VMISFPAAAA ASTSGAQPRS PSGRKPGIRT PRPKRRSSKK SQLKKVVYEV PVADGGVSSD  180
LWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKMVERSP AKPGMLVVTY MAEHCHPVPT  240
QLNALAGTTR HKSAPTGDDD KPTSPGPAAG RAAAGEGVVK CEDVDGNELS AMAADGGAED  300
TAAAADDDGE LWPEGMGLEL DEFLGPMDDD VFEFDHVLED DGVLGRRLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-151802391977Probable WRKY transcription factor 4
2ayd_A5e-151772391374WRKY transcription factor 1
2lex_A5e-151802391977Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRSSKKS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329966250.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g43550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g43550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.10.0PREDICTED: WRKY transcription factor 22
TrEMBLI1NPU00.0I1NPU0_ORYGL; Uncharacterized protein
STRINGLOC_Os01g43550.10.0(Oryza sativa Japonica Group)
STRINGORGLA01G0188000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1140847
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-37WRKY family protein