PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g43230.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 83aa    MW: 9440.47 Da    PI: 5.1502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g43230.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-103366439
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                      +T+eE++l  + +++ G++ W++Ia +++ gRt+k+
  LOC_Os01g43230.3 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAKE 66
                      9******************.*********.***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-82165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-113266IPR009057Homeodomain-like
PfamPF002491.0E-83366IPR001005SANT/Myb domain
CDDcd001672.70E-73366No hitNo description
PROSITE profilePS500906.0053366IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEEDL VFRMHRLVGN RWELIAGRIP  60
GRTAKEYTEG EIWCLETFPR RM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.412421e-108callus| leaf| panicle| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g43230.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g43230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8334471e-106CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621968.11e-56PREDICTED: MYB-like transcription factor ETC3 isoform X2
SwissprotB3H4X81e-17TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLA0A0D9YBT14e-52A0A0D9YBT1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA001192-PA3e-42(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30424.16e-19MYB_related family protein