PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g42710.1
Common NameLOC4325320, OsJ_02587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 1464aa    MW: 151718 Da    PI: 3.7049
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g42710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD134.34e-1113731397125
           zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                        Cg+Cr+lL+Y+rGA +V+C++C+t+
  LOC_Os01g42710.1 1373 CGSCRILLAYFRGAGYVHCTCCQTM 1397
                        ***********************96 PP

2zf-LSD140.54.6e-1314111435125
           zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                        Cg+C tlL+YP+GAp+V+C+lC +V
  LOC_Os01g42710.1 1411 CGHCATLLMYPFGAPAVKCSLCLFV 1435
                        **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1013701400IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-713731396IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.6E-814091436IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-1014111435IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 1464 aa     Download sequence    Send to blast
MASLPEAPVP PESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIGGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPCPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPT  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASR AREPMGSRTA PEPPTPPLES  240
GQEGFQQQQP HPPPTTHPEC DSSEPAELPL PPTSPAEIAY TSPDSVEVDV VAVSPEEAPG  300
STVAMEVMYG ETDTSAVSVS PVLGSAETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDVAEGDV VSGVQEAHGS KFSMEVMYRE TDAAAVSVSP VLESGEPDKA  420
ENDAVEEMQE EAHGSRFAME ATYGEPDASA VSVSPVLESV EPDVTEIDVV SEIQEEAPDS  480
TLAMEVTSGE TDTAAVSAFP VLDGGDPDAA EKNVVAGMQE EEAPDSTLAI EVTSGETDTA  540
AVSVSPVLEG VDPDAAEIDV VAGMQEEAPG STLAMEVTYR ETDATAASVS PVLDSGDPDA  600
AEVDVVVGMQ EQAAGSALAM LVTYGETDTS AVSVSPVLES GEPDAAQIDV VAGMQEEAPG  660
SMLAMEVTYR EVDAATVSVS PVLESVEPDA AKIDVVARMQ EEAPGSKLAM EVMYGETGTA  720
AVSVPLVLES REEGSLQESM QRPSSPTMNI EQESMQRPFS PTIGTETSSP EMAPAGSENC  780
KVSWLPLPPP TPLGESMPSL PVAAAPKVLL VMPEEAVESV PSSEALDVEK PASITQAEPS  840
SPNTPPPGFE NFKSSWLPLP TTPPPVETTD VLPDVVVTKA VEAPIEEVSR PLPALEVTNM  900
ESDTVLSILP TTVLPTEGTE GLLQQPLLRP PSPVVQSEPC LQNEMAPPGF ENFKSSSEPC  960
SAEEIAPPGS DNFKSSSEPC LPEEMAPPGF ENFKSSSEPC SQEEMAPPGF ENFKSSWPPL  1020
PTLPQTVPDA AAADALAATV EEAAGPPPAL ELEAMDVDMD AIHPPPLPFD SGVESLQKPL  1080
PRAPSPIMQE APCSPDRAPP GFETYKSSQL LLPSPSLAQT TNVRQDQSVT EPVSVIEEAP  1140
QLLHSVEVMG VHMDAVPPLL PSSESGADGL SPQQFAQPPP AEKDTTTCLP DMVHSGCDNS  1200
EPSQLLSLPA VISPVQTPDG LADVPAIDRV AVALEESPQR PLVSGEMEAG TVPIRSSPLK  1260
NISEGSLPQL ESESHSPTSQ AADSLLDASD SKSVAVASEE MSQLPLASQA TTTDLVSTTA  1320
MQPQSEGIVD ESLQPQHPPS STAHDSPCLQ DSVPLVPPPP SPYLNKEVGQ MVCGSCRILL  1380
AYFRGAGYVH CTCCQTMNYV LEAHEVGKVH CGHCATLLMY PFGAPAVKCS LCLFVTEIGE  1440
RNVRRRLSIE QPTRTNSSGL AEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.10210.0callus| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329753930.0
Expression AtlasA2ZVC5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g42710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g42710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033140.0AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBankAP0028660.0AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621461.10.0PREDICTED: fibrous sheath CABYR-binding protein
TrEMBLA2ZVC50.0A2ZVC5_ORYSJ; Uncharacterized protein
STRINGLOC_Os01g42710.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1433633
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-29lsd one like 2