PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39330.1
Common NameB1112D09.6, LOC4326315, Os01g0575200, OsJ_02312, OSNPB_010575200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 455aa    MW: 46854.5 Da    PI: 5.1101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13267312555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  LOC_Os01g39330.1 267 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 312
                       7789*********************9.....699***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-16261329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12267315No hitNo description
Gene3DG3DSA:4.10.280.108.8E-16267329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG  60
GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAMSTL AVPHPYPPPV AHGMFASGDG GGGGGGAVDD HEDAIMRAMM AVISSASASP  180
SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQQPRGGNG GHVVVKSSSS SGGLAVPMDQ  240
KPGGGGRGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV  300
LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAADAAM RARRAQQRAK VQISKAADSQ  360
SQQLVSLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI  420
VGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275ERKRRE
2271276RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.980940.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160130390.0
Expression AtlasQ8S0C6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLB8AAS90.0B8AAS9_ORYSI; Putative uncharacterized protein
TrEMBLQ8S0C60.0Q8S0C6_ORYSJ; Basic helix-loop-helix (BHLH) family protein-like
STRINGBGIOSGA003814-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os01g39330.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1200956
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-22bHLH family protein