PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g39180.1
Common NameB1129G05.35, B1151A10.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 322aa    MW: 35174.2 Da    PI: 9.8144
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g39180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26076.54.8e-24891912101
            DUF260   2 CaaCkvlrrkCakdCvlapyfpa......eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                        aa+++l+   akd vla + pa      +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e
  LOC_Os01g39180.1  89 EAAMRHLQG--AKDGVLAGV-PArvilhgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVE 178
                       578888877..566666555.333333347789************************************************************ PP

            DUF260  89 qlkaelallkeel 101
                       ++ a+l++l+++l
  LOC_Os01g39180.1 179 RELAKLSKLRQKL 191
                       ********99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.40185191IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-1992188IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAISPAATAS TPRWSSSSTI SACPSQAAMC ITVLDPSSEI SNHTSTAAQS PPKSGRRGGF  60
DIGDNGGRSV PCAQVISTAA ASVPAAAAEA AMRHLQGAKD GVLAGVPARV ILHGDEKVRL  120
LNAQRLFGTR NIRRFVQATL PEKRDDLMSS IKYEAQVWAR NPQSGATGVM WHLERKVERE  180
LAKLSKLRQK LEMCKNLAAK KSILEAKGVG VRQVTFKEQE QERQYQACPA RISAWTLRLF  240
VHRSACEIPI SQMESHIACM QFFGRAFMAF VGQIQEEAIN HEAEDAHYDF FPLQPHLVLD  300
SPRNPHPLGR PPLTRSHNVH G*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ656S6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g39180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g39180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ656S60.0Q656S6_ORYSJ; Uncharacterized protein
STRINGLOC_Os01g39180.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1987288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.16e-10LOB domain-containing protein 7