PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g33400.1
Common NameB1003B09.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 178aa    MW: 18405 Da    PI: 8.3327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g33400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-063475954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er RR+ +   ++eL  llP++     ++ s   i+e+A+ ++ +L
  LOC_Os01g33400.1 34 ERARRQTMSRLYDELGALLPNL----PPRASTTRIVEEAIACVGEL 75
                      9********************6....389**********9887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8552575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-83085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-53377No hitNo description
Gene3DG3DSA:4.10.280.103.0E-63384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-4121172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAEEDNLALS VVCERSPGTA VEAASGRPPK AGSERARRQT MSRLYDELGA LLPNLPPRAS  60
TTRIVEEAIA CVGELRARTA ELEAYSAVAA AAGRAARDGP AEVVASGKTS CFAVRLRAAR  120
ARPGALTRVL EVFQRHGVAV LAATVARDGE ETAVTVTTAA VAPRVLETIK AEIICAA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LQ30
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g33400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g33400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0042220.0AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620183.12e-19PREDICTED: uncharacterized protein LOC107278004
TrEMBLA0A0E0FMA81e-118A0A0E0FMA8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MX921e-118A0A0E0MX92_ORYRU; Uncharacterized protein
TrEMBLA2WQQ51e-118A2WQQ5_ORYSI; Putative uncharacterized protein
TrEMBLQ8LQ301e-118Q8LQ30_ORYSJ; Putative uncharacterized protein B1003B09.3
STRINGBGIOSGA001523-PA1e-118(Oryza sativa Indica Group)
STRINGBGIOSGA001526-PA1e-118(Oryza sativa Indica Group)
STRINGLOC_Os01g33400.11e-118(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1206823
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-07bHLH family protein