PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g32770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 331aa    MW: 35019.8 Da    PI: 5.3757
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g32770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.5e-314106198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +
  LOC_Os01g32770.1   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQAC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallk 98 
                       q+++e++l +
  LOC_Os01g32770.1  97 QAAVEAVLKG 106
                       ****998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.533109IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA  120
QATPPLRAYD IRHVSKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR  180
AASPSSSSPT HETEPEAVVV VGDHDDDHHH PALSHEVHEE SAGSHDHDDD DHVDDGDNND  240
MAIADVTPPR AGSEDTEVET GSHVSQAEQS PVPVEHEEGE EEEVGLELTL GFQPLVVRAS  300
RRPSSAEARC DLSGLSAESS RIGLRLELPA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.225770.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166325460.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g32770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g32770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0030770.0AP003077.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0520B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628244.10.0PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8866e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0E0MX471e-176A0A0E0MX47_ORYRU; Uncharacterized protein
STRINGLOC_Os01g32770.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-70LOB domain-containing protein 41