PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g24460.1
Common NameLOC4326495, Os01g0346900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 445aa    MW: 49180.7 Da    PI: 5.0048
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g24460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC82.64.7e-2621122199
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       q+  fw ++   ie ++df +h +P+ar+kki+ +++   m++ + P++lsk celf+ el+ r+w  a++ +r  +   dia+av++t+ +d
  LOC_Os01g24460.1  21 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAARAWACAQSHNRCIILDMDIAEAVASTESYD 113
                       68899*7655669******************************************************************************** PP

             NF-YC  91 flvdivprd 99 
                       flvdi  ++
  LOC_Os01g24460.1 114 FLVDILHNH 122
                       ****98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001251.1E-927106IPR007125Histone H2A/H2B/H3
SuperFamilySSF471131.06E-1644120IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.0E-2045119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MKQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIVSSQKGNM  60
MMTFDMPAFL SKMCELFVQE LAARAWACAQ SHNRCIILDM DIAEAVASTE SYDFLVDILH  120
NHSVKQKSTP CSSTKRCRLV DQPSTSHIPH QHLLPQFAPT YTLAIPITPS LMPLISQCTP  180
SSFPSLPQEK FPLMAPTPIV NRSMLFINNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA  240
VLASMMNPAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SNNSSVIVAN QANIAPSGHF  300
YPIALQSSCS TFLHSNNNDT ITAILEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV  360
EWHHQNEIYE SIDIRIINAT TRDGNKCSIS WDELGMADDS LLDNFLEELQ VRKDDVSDTR  420
IAFNKDPFLD DAVLSNPSTS NGNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-123811936117HapE
4g92_C1e-123811936117HapE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.608520.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2975967120.0
Expression AtlasQ0JMZ9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g24460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g24460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0038520.0AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10.
GenBankAP0032050.0AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635714.10.0PREDICTED: uncharacterized protein LOC4326495 isoform X1
TrEMBLQ0JMZ90.0Q0JMZ9_ORYSJ; Os01g0346900 protein
TrEMBLA0A0E0MVY70.0A0A0E0MVY7_ORYRU; Uncharacterized protein
STRINGLOC_Os01g24460.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-24nuclear factor Y, subunit C4