PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g24070.2
Common NameB1045F02.28, LOC4326489, Os01g0343300, OSNPB_010343300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 102aa    MW: 10989.4 Da    PI: 9.9907
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g24070.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.44.6e-141251135
              GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
                      +WR+gp g+++LCnaCG++yrkk++
  LOC_Os01g24070.2  1 MWRSGPTGPRSLCNACGIRYRKKRR 25
                      7*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-4135IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-9126IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-6125No hitNo description
PfamPF003205.7E-12125IPR000679Zinc finger, GATA-type
CDDcd002025.92E-9226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MWRSGPTGPR SLCNACGIRY RKKRRQDLGL DLNQPQKQEH GEVIPEVKDS NSNSNNCNSG  60
SGNSSSNLQV VPKRRLLMGV EEAALLLMTL SSPSASTLLH G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.212391e-173callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166396651e-173
Expression AtlasQ8LQW5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g24070.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g24070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4066001e-171CU406600.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103I12, full insert sequence.
GenBankCT8415701e-171CT841570.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102C07, full insert sequence.
GenBankCT8296261e-171CT829626.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA214F08, full insert sequence.
GenBankBT1324001e-171BT132400.1 Oryza sativa clone RRlibD00393 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621366.18e-69PREDICTED: GATA transcription factor 23
TrEMBLA0A0E0MVX19e-69A0A0E0MVX1_ORYRU; Uncharacterized protein
TrEMBLA0A0E0MVX29e-69A0A0E0MVX2_ORYRU; Uncharacterized protein
TrEMBLQ8LQW59e-69Q8LQW5_ORYSJ; Os01g0343300 protein
STRINGLOC_Os01g24070.12e-68(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-13GATA transcription factor 15