PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g23780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 279aa    MW: 28862.6 Da    PI: 5.8514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g23780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.6e-086391043
                      HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        t+ k ++ ++  A ELS+LC+++va++ ++  
  LOC_Os01g23780.1  6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39
                      57999************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.503134IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-7640IPR002100Transcription factor, MADS-box
PfamPF003197.1E-7737IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGGGAV STAEVAVWES  60
EEGVLASYRA ILPRPEAHTL RECLELKLAR ERAKLAMLHQ YGGGGAGAAR VHGRGDGGRD  120
REAGGAALGL LDDGNAVNGD GGGPDLLHIP IQPGAPDSVV VPVISHAQPI ASSTGADFAD  180
APNGFLAMDV GGSLIKSATT QRSARPMGSS SGTPTMANLD QIHYLVGGSA FSIDALESPT  240
LLVRCKTLRI AIQFMLPLRH GRFRANVPSN HRRTETKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g23780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g23780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033370.0AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12.
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IT081e-129A0A0E0IT08_ORYNI; Uncharacterized protein
STRINGLOC_Os01g23780.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2316555