PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g20700.1
Common NameOSJNBa0008D05.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 344aa    MW: 38874.9 Da    PI: 9.561
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g20700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.67.6e-101876155
           G2-like  1 kprlrWtpeLHerFveav.eqLGGsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55
                      kpr +Wt +  ++F ea  e+L  s k +P ++l   + m+  gLtl+++ S LQkYRl
  LOC_Os01g20700.1 18 KPRFVWTLQQNAKFSEAYkEELSRSGKVVPTKLLkrlKSMNETGLTLQNISSRLQKYRL 76
                      79***************8357*********999722257999****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-71580IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-121680IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MLGEAAQEQP AAQNQPRKPR FVWTLQQNAK FSEAYKEELS RSGKVVPTKL LKRLKSMNET  60
GLTLQNISSR LQKYRLSLKR QTSHVDQSTS TDSTTASSIQ TKQTPALLQQ IIHPRALHTQ  120
LAPDVHQVIT TNLPQQHIQH YQPNQILSQL YNMHHQQVER LSEPHSNEPI YKEYNNLAQR  180
FTQVNYHGHS SIHDHHYANI IKKLLPPNVM QPCDLINALP QQPAAATACC MQSNTQTVSS  240
ALLVKGMQNH PPDHHIQAFG VLDMGTAQYM GQQLNMYTAE GNWRGTTPQN MHPISQVHRH  300
VSEPPPSYFS NNAKANGRSQ EDLDVVLQQK LVINDSLVRI IPF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5JCW6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g20700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g20700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0072040.0AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637489.11e-137PREDICTED: uncharacterized protein LOC107277696
TrEMBLA0A0E0MVB00.0A0A0E0MVB0_ORYRU; Uncharacterized protein
TrEMBLQ5JCW60.0Q5JCW6_ORYSJ; Putative uncharacterized protein
STRINGLOC_Os01g20700.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1985788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-06response regulator 2