PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g18440.1
Common NameP0469E05.3, P0511C01.23
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 307aa    MW: 33213 Da    PI: 6.6737
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g18440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ri n+  r  tf kRr g+lKKA+EL +LCd++++++++++
  LOC_Os01g18440.1 10 RIANDATRRATFKKRRRGLLKKASELATLCDVDACLVVYGE 50
                      899************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.105150IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-23160IPR002100Transcription factor, MADS-box
CDDcd002662.87E-34285No hitNo description
SuperFamilySSF554551.57E-24392IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-12323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-181050IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MARKKIVLDR IANDATRRAT FKKRRRGLLK KASELATLCD VDACLVVYGE GDAEPEVWPS  60
TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA  120
LQGRLGTYES LSVEQLTSVD CLASARLKVI TDRLVEIRAP NEDGQVLVPP PPPPPPALPA  180
PPPPPAPMLP LAPPPTHVTP AMPLSSMPPP AFHGMNHHHH QNHFINHGGN DQNAWLMNVA  240
RNGGDLGALV YSAFASSSSS NTGGAGTSAA GAAAPGPDMM DLANPDMPGF GCPWDDDSAG  300
PSFPPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIVLDRIANDATRRATFKKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5NB09
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g18440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g18440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0020700.0AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637380.11e-115PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0E0MUX00.0A0A0E0MUX0_ORYRU; Uncharacterized protein
TrEMBLQ5NB090.0Q5NB09_ORYSJ; Putative MADS-box protein AGL35
STRINGLOC_Os01g18440.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11413173
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-26AGAMOUS-like 80