PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g17260.1
Common NameLOC4326907, Os01g0279900, OSNPB_010279900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 330aa    MW: 36837.4 Da    PI: 7.798
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g17260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-104385345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                      + k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  LOC_Os01g17260.1 43 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85
                      56889*************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-83588No hitNo description
SMARTSM003389.8E-841104IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384387IPR004827Basic-leucine zipper domain
PfamPF001703.0E-74485IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-74588No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141444.9E-34127202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS  60
RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QTHSMSGNGA LAFDMEYARW  120
LEEHNRQINE LRSAVNAHAG DNELRGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT  180
PAERCFLWLG GFRPSELLKL LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS  240
LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR  300
QSARALLVIS DYSSRLRALS SLWLARPKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.4390.0callus| flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160121080.0
Expression AtlasQ0JNL3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g17260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g17260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9911680.0HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBankAB0512960.0AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBankAK2427430.0AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBankKM0965710.0KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621704.10.0PREDICTED: transcription factor HBP-1b(c38)
RefseqXP_015621703.10.0PREDICTED: transcription factor HBP-1b(c38)
SwissprotP239230.0HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBLA0A089VSH30.0A0A089VSH3_ORYSI; Histone-binding protein
TrEMBLA0A0E0FK570.0A0A0E0FK57_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MUP70.0A0A0E0MUP7_ORYRU; Uncharacterized protein
TrEMBLQ0JNL30.0Q0JNL3_ORYSJ; Os01g0279900 protein
TrEMBLQ8W5R80.0Q8W5R8_ORYSA; BZIP transcription factor
STRINGLOC_Os01g17260.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-144TGACG motif-binding factor 6