PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g16740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1213aa    MW: 140283 Da    PI: 7.3602
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g16740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.93.2e-13455529166
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkakl 66 
                       +++n+YA+++GFs+++ +s ++   krn+e+++ tf+C+k+ k++ ++k       ++ er+t+++  t+Ck+ +
  LOC_Os01g16740.1 455 NYFNFYAYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVVGTECKCVM 529
                       59**************99998888899******************9999899999889999************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-12455530IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33652744IPR018289MULE transposase domain
PfamPF044341.1E-5937970IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.002937973IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7948975IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1213 aa     Download sequence    Send to blast
MEINEKIDDR EANLQYAQKG ITSLSDLEKG KGEEKEKSTD SGKKSQGLKI MKQLAGKIEA  60
GTSTDSVNSK SGTEEKILKI SNDLKKADEK QLQEVKTSRG FETDTDKKAQ GFKTMKQLPG  120
IFEDGTCTAL VQSNSGLAFL EKNYNTTQSY KMQEKQRQHK IRGHLSDIGS KIEKKNTTNQ  180
TGLALLEENY NTTLSYRVQE NMDITKTGKG KIMKQIAGNS KDFSETEAKL DKTKNSEADI  240
GCSALNESEK KNGANNAKVD YENNVLSLLD QDYIVDSFIS YTSLMEHIIS SQPKRCNELK  300
VEGTQNDTIE TGIGQDYQKV DESLNSHVEY QSEQRCSMDI LNLQESVQDK SLEQTSEIGY  360
SNVDNQSQHA WSLDIFNLQE SVQEPILEQS SDIGNISGNG VDDAVLNDEL LTEEDIEQFL  420
EEEQQEALKG NNANIDRKYI PELDQKFKSI IEAQNYFNFY AYMAGFSIVN VHSARTTSKK  480
RNREVIRVTF KCYKYVKADC NTKPETVDET ATGERKTNEV VGTECKCVML SPPDEVRFLR  540
SHKYLSTEER VLIRTLKECH IPTRNMIVIL SVLRGGLTSL PYTKKDISNV RTEINRETSS  600
NDMMQCLTYL KKKQEENPNF FYEFDLDENR KGRNFFWTDG RSRDWYHKFG DCISFDTTFL  660
TNRYNLPFAP FVGVSGHGNT ILFGCAFLHD ETTETFEWLF ITFLKCMNGK QPKTIITDQD  720
GAMRAAIKNI FREAKHRNCF FHIISKALKR SGSLFKKRQG LYAIYSDIIH NCLTEEEFEV  780
LWQDMIQEFN LQEINFLAHM WHIRKRFIPV YFKTNFCLFI QSTALSEGTN SRFKKNVGPQ  840
YSIRSFLTEY ERVMETIQNL EQHDDHESRT KRPTSFWSNY SIEYQAVKLY NNKIFKRFQA  900
QLRKTLELQV EEIEKFKCYA VFEAENVISK QIRKRKYLVI MDLDIEEYTC ICAMFQKDGI  960
LCSHILKIML DLSIKEIPEK YIMHRWRKNH KSTEIIKGKE IIPVSESSVL RFNILSRKFA  1020
EIASKGAKTV EAYKFLMEES EKIDEKLNTM FSHEFEGADK QQGHEENNSF SPTAEVNEKS  1080
ENTHIHGDIR NKEDYIEDPD IANSKGRTKQ RYKTIREQIE DKETNHCSHC GRTEHTFPTC  1140
PFKHIEFYLA RKRKRKIPSK PQKSGEEEKK EATSKKRKPN KKENTEIGKS HQDEVQQLSK  1200
RVKKKSEINT SK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111501155RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g16740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g16740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0008370.0AP000837.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0424A08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ75L920.0Q75L92_ORYSJ; Uncharacterized protein
STRINGLOC_Os01g16740.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5