PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g13460.1
Common NameLOC4327781, Os01g0235700, OSNPB_010235700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 618aa    MW: 66982.3 Da    PI: 6.6213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g13460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12463509455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  LOC_Os01g13460.1 463 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 509
                       799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-15462513No hitNo description
SuperFamilySSF474591.09E-18462525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10463509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-18463522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEADED GANGGTGGTW TDEDRALTAS VLGTDAFAYL TKGGGAISEG LVAASLPVDL  60
QNRLQELVES DRPGAGWNYA IFWQLSRTKS GDLVLGWGDG SCREPHDGEM GPAASAGSDE  120
AKQRMRKRVL QRLHSAFGGV DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA  180
GVPLWIPNTE RNVFPANYCY RGYLANAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT  240
IRSVFAGAIG NKAGVQRHEG SGPTDKSPGL AKIFGKDLNL GRPSAGPGTG VSEADERSWE  300
QRTGGGSSLL PNVQRGLQNF TWSQARGLNS HQQKFGNGIL IVSNEATPRN NGGVDSSTAT  360
QFQLQKAPPL QKLPQLQKSH QLVKPQQLVS QQQLQPQAPR QIDFSAGTSS KPGVLTKKPA  420
GIDGDGAEVD GLCKDEGPPP ALEDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  480
ALRAVVPNIS KMDKASLLGD AITYITDLQK KLKEMEVERE RLIESGMIDP RDRTPRPEVD  540
IQVVQDEVLV RVMSPMESHP VRAIFQAFEE AEVHAGESKI TSNNGTAVHS FIIKCPGAEQ  600
QTREKVIAAM SRVMNSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24602459192Transcription factor MYC3
4rqw_B2e-24602459192Transcription factor MYC3
4rru_A2e-246024148227Transcription factor MYC3
4rs9_A2e-24602459192Transcription factor MYC3
4ywc_A2e-246024148227Transcription factor MYC3
4ywc_B2e-246024148227Transcription factor MYC3
4yz6_A2e-24602459192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444452RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.459830.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166332420.0
Expression AtlasQ0JP90-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g13460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g13460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0015390.0AP001539.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0708G02.
GenBankAK1210130.0AK121013.1 Oryza sativa Japonica Group cDNA clone:J023047M20, full insert sequence.
GenBankAK0649430.0AK064943.1 Oryza sativa Japonica Group cDNA clone:J013000P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0PREDICTED: transcription factor bHLH13
TrEMBLQ0JP900.0Q0JP90_ORYSJ; Os01g0235700 protein
STRINGLOC_Os01g13460.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25311123
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-71bHLH family protein