PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g13300.1
Common NameLOC4324291, Os01g0234100, P0702F03.19
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 496aa    MW: 55530.4 Da    PI: 7.1927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g13300.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-17152241198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp  f++++  k   +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l+++++f  +
  LOC_Os01g13300.1 152 FVKHMLHSHVVSGFWLGLPAGFCNKYLPK--HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVSTTKF--K 236
                       899********************999433..5679***************..888888..9***********************988888..8 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v+++r
  LOC_Os01g13300.1 237 VHIIR 241
                       88877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-21146242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24147241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-27150241No hitNo description
PROSITE profilePS5086312.478152243IPR003340B3 DNA binding domain
SMARTSM010193.4E-18152244IPR003340B3 DNA binding domain
PfamPF023625.4E-16152241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRAIIIDCDE  60
DDTDDVMEVV PLKMLMPKEV ENEQRTVPGI PQTCNTQNTS NGRTNTTEVP VKGQNKCASY  120
LPKKSSVQAF CGSAMKRAQE IQTKLPAEHP SFVKHMLHSH VVSGFWLGLP AGFCNKYLPK  180
HDTDIVLEDE NGNNHNTNYL GGKQGLSAGW RGFAINHDIK VGDVVVFELV STTKFKVHII  240
RDKNISPTDR APGLKSFYAC KKRKISKEAT DNATKPKEDP ETTRVSSKVA HDDTQNLVHE  300
AIDGIRFSDS EMSFDDVMSY SNFNIVVDGL VIDCKFPDHQ RRTYYELCCA QKSFLHRHLL  360
RQLSLTLVVG VIMETINIAE GIRACGAGTS SQEDFLIWKK TLQSFDLLGM NVAFLLKRVD  420
DILGLPEQPR DPSECSKYNE LKLERSRAGE KVKALESMML TVKDVLKKID AEMEEMESSV  480
RNHDIALRKI ATAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546360.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329915410.0
Expression AtlasQ0JP99-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g13300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g13300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0PREDICTED: B3 domain-containing protein Os01g0234100
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLB8AB210.0B8AB21_ORYSI; Putative uncharacterized protein
STRINGLOC_Os01g13300.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7667818
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-35B3 family protein