PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g12700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 359aa    MW: 40487.3 Da    PI: 6.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g12700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-1486137146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 
                       +g+WT +E  +l +++k++G ++Wk++ +  g      ++Rt++++k++w++
  LOC_Os01g12700.1  86 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllsfciTRRTDNEIKNYWNT 137
                       79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.27381143IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-1482141IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1083141IPR009057Homeodomain-like
SMARTSM007171.5E-1085141IPR001005SANT/Myb domain
PfamPF002499.4E-1286137IPR001005SANT/Myb domain
CDDcd001671.58E-988137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MQRECIVSGP IDGSISATGD GARRGVGGMR GHRSRVRGDG GLRMHRSGSD PDSDKAHWYM  60
SNSDDESFVD KDKDCRRGTV APLLKKGPWT SWENSILEKY IKKHGERNWK LVQKNTGLLS  120
FCITRRTDNE IKNYWNTRIK KCKNNRWLLY PANVCNDALN EDQYGSVDPS VREKLTNNQL  180
EDTTSMYSAP QFSYASISNI LDRRLASKDY DSIEDQRNRI EVAAEYEISL PVLKTTNNDI  240
FPSASIFANH GISNGNLSAL STTDALQMEL PLIQFDPNNQ FIYSRDYATH LTNLALLNDQ  300
AEELLNHIDV LNYVVMKKEL SGGSLSPTIN MPCKATAYSS ELPLCKGYRE QDLDFYTQ*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO26056240.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g12700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g12700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639103.11e-180PREDICTED: transcription factor GAMYB
TrEMBLA0A0D9Y5H80.0A0A0D9Y5H8_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g12700.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-15myb domain protein 101