PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g11910.1
Common NameLOC4324583, Os01g0218100, OSNPB_010218100, P0489G09.6, P0665D10.21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 268aa    MW: 27241.8 Da    PI: 8.9519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g11910.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-1380126354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++v ++k+L
  LOC_Os01g11910.1  80 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVGHVKKL 126
                       58*************************7.....6**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18677126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1080126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1481128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1381131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.3E-6166234No hitNo description
CDDcd048734.53E-5167233No hitNo description
SuperFamilySSF550214.3E-6167234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGSAPFGDAV AGGGLYEYQG YHGGFAGGHG LGQPAGRAPA LDDGETEGMD ASAAAAVAAM  60
EMAKRNCGGG REEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCTDKM DKAALLAEVV  120
GHVKKLKSAA ARVGRRATVP SGADEVAVDE ASATGGGGEG PLLLRATLSC DDRADLFVDV  180
KRALQPLGLE VVGSEVTTLG GRVRLAFLVS CGSRGGAAAA AMASVRHALQ SVLDKASSGF  240
DFAPRAASLL GSKRRKVSTF ESSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264880.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329786100.0
Expression AtlasQ9FTQ1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g11910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g11910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685930.0AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621912.10.0PREDICTED: transcription factor bHLH30
TrEMBLA2WM430.0A2WM43_ORYSI; Putative uncharacterized protein
TrEMBLQ9FTQ10.0Q9FTQ1_ORYSJ; DNA binding protein-like
STRINGLOC_Os01g11910.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA003013-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-30basic helix-loop-helix 32