PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g11200.1
Common NameP0031E09.10, P0466B10.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 276aa    MW: 31795.5 Da    PI: 8.3306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g11200.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.6e-15113161348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT+eEd  l ++ + +G ++W+++a++m+    +R++kqc++rw+++l
  LOC_Os01g11200.1 113 AWTPEEDACLERLARGYGFRHWRRVAEEMQpreRRRSPKQCRDRWRDHL 161
                       8*********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.194106165IPR017930Myb domain
SMARTSM007176.4E-12110163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-17113170IPR009057Homeodomain-like
SuperFamilySSF466891.64E-17113184IPR009057Homeodomain-like
CDDcd001671.06E-11113161No hitNo description
PfamPF002493.5E-14113161IPR001005SANT/Myb domain
PROSITE profilePS500906.574162214IPR017877Myb-like domain
SMARTSM007179.7166216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5171215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEKEVPKNLL RISVASSTQD TERYHTIFYH VSRDTRKVSY DFNHVSRDTH EVSCDTCRVS  60
DDFYHVSRDT RKVSDDFYHV SRDTCEVSDD TYQVAATPSS AMRIILRIRL SPAWTPEEDA  120
CLERLARGYG FRHWRRVAEE MQPRERRRSP KQCRDRWRDH LARDVYHRPF TADDDAELAH  180
LRLRGGGGDR WKDISRAAHC RTSRAMRRRW RELRKSDAFL RALYWHPDQP VPPLLDDALS  240
CSDVLDSSVA SYRGGCDAVA GGGTIVAPGF ACFAA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5QNG3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g11200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g11200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0020930.0AP002093.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466B10.
GenBankAP0020920.0AP002092.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636830.11e-101PREDICTED: uncharacterized protein LOC107275864
TrEMBLQ5QNG30.0Q5QNG3_ORYSJ; Myb-like transcription factor-like
STRINGLOC_Os01g11200.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10428310
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-16myb domain protein r1